TBLASTN 7.6.0


Query=uc003mpi |5_h2_hap1|BX647445|NA|NA|GTF2H2|NA|NA|Homo sapiens basic
       transcription factor 2 mRNA, complete cds
        (174 letters)

Database: Zv8_masked;
          14,546 sequences; 493,649,665 total letters
                                                                  Score    E

Zv8_masked||Zv8_scaffold590 |chr5|Len:3284637|start:23294260|end...     62   8e-009
Zv8_masked||Zv8_scaffold590 |chr5|Len:3284637|start:23294260|end...     54   2e-006
Zv8_masked||Zv8_scaffold590 |chr5|Len:3284637|start:23294260|end...     50   2e-005
Zv8_masked||Zv8_scaffold590 |chr5|Len:3284637|start:23294260|end...     49   7e-005

>Zv8_masked||Zv8_scaffold590 |chr5|Len:3284637|start:23294260|end:26578896

          Length = 3284637

 Score =  62 bits (148), Expect = 8e-009
 Identities = 27/35 (77%), Positives = 33/35 (94%)
 Frame = +2

Query:    122 GNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTL 156
              |||.||||.|.|||| || |||||||||..|.|||
Sbjct: 902087 GNPKKHITALRKAVDSTCVGEPSLYNSLNMALQTL 902191

>Zv8_masked||Zv8_scaffold590 |chr5|Len:3284637|start:23294260|end:26578896

          Length = 3284637

 Score =  54 bits (128), Expect = 2e-006
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = +2

Query:     58 MRHLYVVVDGSRTMEDQDLKPNRLTCTLKL 87
              ||||.|..| ||.|||||||||||| |||.
Sbjct: 901667 MRHLFVIIDSSRSMEDQDLKPNRLTSTLKV 901756

>Zv8_masked||Zv8_scaffold590 |chr5|Len:3284637|start:23294260|end:26578896

          Length = 3284637

 Score =  50 bits (118), Expect = 2e-005
 Identities = 23/26 (88%), Positives = 26/26 (100%)
 Frame = +2

Query:     20 EILKEDESGSLKATIEDILFKAKRKR 45
              |.||||||||||||.|||||.|||||
Sbjct: 899666 EVLKEDESGSLKATVEDILFQAKRKR 899743

>Zv8_masked||Zv8_scaffold590 |chr5|Len:3284637|start:23294260|end:26578896

          Length = 3284637

 Score =  49 bits (114), Expect = 7e-005
 Identities = 19/19 (100%)
 Frame = +3

Query:      1 MDEEPERTKRWEGGYERTW 19
              |||||||||||||||||||
Sbjct: 898866 MDEEPERTKRWEGGYERTW 898922

 
    Posted date:  Mon Feb 02 16:56:45 2009
  Number of letters in database: 493,649,665
  Number of sequences in database:  14,546

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,280,994,843
Number of Sequences: 14546
Number of Extensions: 3280994843
Number of Successful Extensions: 106970508
Number of sequences better than 0.0: 0
TBLASTN 7.6.0