BLASTP 7.6.0


Query=uc003rpi |6_cox_hap1|BC053886|Q4VXY5|Q4VXY5_HUMAN|COL11A2|NA|NA|Collagen
       type XI alpha 2 (Fragment)
        (290 letters)

Database: Zv7_masked;
          7,494 sequences; 480,106,604 total letters
                                                                  Score    E

Zv7_masked||Zv7_scaffold1881 |chr19|Len:3940805|start:4464869|en...     89   1e-016
Zv7_masked||Zv7_scaffold2333 |chr24|Len:852486|start:26652353|en...     88   3e-016
Zv7_masked||Zv7_scaffold2048 |chr21|Len:170709|start:6943760|end...     86   1e-015
Zv7_masked||Zv7_NA70 |chrNA|Len:105701                                  86   1e-015
Zv7_masked||Zv7_scaffold109 |chr2|Len:2140581|start:10426824|end...     86   1e-015
Zv7_masked||Zv7_scaffold2048 |chr21|Len:170709|start:6943760|end...     85   2e-015
Zv7_masked||Zv7_scaffold1881 |chr19|Len:3940805|start:4464869|en...     83   7e-015
Zv7_masked||Zv7_scaffold109 |chr2|Len:2140581|start:10426824|end...     78   3e-013
Zv7_masked||Zv7_scaffold231 |chr3|Len:3782459|start:4839510|end:...     78   3e-013
Zv7_masked||Zv7_scaffold231 |chr3|Len:3782459|start:4839510|end:...     78   3e-013
Zv7_masked||Zv7_scaffold2333 |chr24|Len:852486|start:26652353|en...     73   7e-012
Zv7_masked||Zv7_scaffold231 |chr3|Len:3782459|start:4839510|end:...     72   2e-011
Zv7_masked||Zv7_NA70 |chrNA|Len:105701                                  71   3e-011
Zv7_masked||Zv7_scaffold2333 |chr24|Len:852486|start:26652353|en...     63   8e-009
Zv7_masked||Zv7_scaffold1881 |chr19|Len:3940805|start:4464869|en...     62   2e-008
Zv7_masked||Zv7_scaffold109 |chr2|Len:2140581|start:10426824|end...     61   4e-008
Zv7_masked||Zv7_scaffold2048 |chr21|Len:170709|start:6943760|end...     59   1e-007
Zv7_masked||Zv7_scaffold231 |chr3|Len:3782459|start:4839510|end:...     47   7e-004
Zv7_masked||Zv7_scaffold231 |chr3|Len:3782459|start:4839510|end:...     47   7e-004
Zv7_masked||Zv7_NA70 |chrNA|Len:105701                                  45   0.003

>Zv7_masked||Zv7_scaffold1881 |chr19|Len:3940805|start:4464869|end:8405673

          Length = 3940805

 Score =  89 bits (219), Expect = 1e-016
 Identities = 41/71 (57%), Positives = 57/71 (80%)
 Frame = -2

Query:     78 GGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVRQLGLELGRPVRFLYEDQTGRPQPPSQP 137
              | ||..||..|.|. . |||| ||..|. |||.||||||||   ||||||  .| |   |
Sbjct: 432352 GRFPENFSIMTLVKAKAGLQAFLLSIYNEQGVQQLGLELGRSPIFLYEDQHRKPAPEDYP 432173

Query:    138 VFRGLSLADGK 148
              .|.|..|||||
Sbjct: 432172 LFKGVNLADGK 432140

>Zv7_masked||Zv7_scaffold2333 |chr24|Len:852486|start:26652353|end:27504838

          Length = 852486

 Score =  88 bits (216), Expect = 3e-016
 Identities = 39/71 (54%), Positives = 56/71 (78%)
 Frame = +1

Query:     78 GGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVRQLGLELGRPVRFLYEDQTGRPQPPSQP 137
              | ||.|||.|| .. . |.|. ||..|. .||.|||.|.||   |||||| |.| |   |
Sbjct: 227506 GVFPEDFSILTTIKPKAGIQSFLLSIYNEKGVQQLGVEVGRSPVFLYEDQEGKPAPEDYP 227685

Query:    138 VFRGLSLADGK 148
              .|| |.|||||
Sbjct: 227686 LFRALNLADGK 227718

>Zv7_masked||Zv7_scaffold2048 |chr21|Len:170709|start:6943760|end:7114468

          Length = 170709

 Score =  86 bits (211), Expect = 1e-015
 Identities = 39/69 (56%), Positives = 53/69 (76%)
 Frame = -2

Query:     80 FPKDFSLLTVVRTRPGLQAPLLTLYSAQGVRQLGLELGRPVRFLYEDQTGRPQPPSQPVF 139
              ||.|||.|  || . | |. ||..|. ||..|||||.||   |||||  |.| |   |.|
Sbjct: 123881 FPEDFSILATVRPKKGSQSFLLSVYNEQGIQQLGLEVGRSPVFLYEDHLGKPGPEDYPLF 123702

Query:    140 RGLSLADGK 148
              ||..|||||
Sbjct: 123701 RGINLADGK 123675

>Zv7_masked||Zv7_NA70 |chrNA|Len:105701

          Length = 105701

 Score =  86 bits (210), Expect = 1e-015
 Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
 Frame = -1

Query:    49 RAKGICPADVAYRVARPAQLSAPTRQLFPGG------FPKDFSLLTVVRTRPGLQAPLLT 102
             |   .|  |..                          || |||.|  || | | |  ||.
Sbjct: 91415 RPASVCHEDLSA.....................PDSEFPVDFSVLLTVRARRGAQCFLLS 91236

Query:   103 LYSAQGVRQLGLELGRPVRFLYEDQTGRPQPPSQPVFRGLSLADGK 148
             .| ..||.|||.||||   ||||||.||| |   |.|. ..|||||
Sbjct: 91235 VYDSEGVQQLGVELGRSPVFLYEDQSGRPSPDLYPIFKKINLADGK 91098

>Zv7_masked||Zv7_scaffold109 |chr2|Len:2140581|start:10426824|end:12567404

          Length = 2140581

 Score =  86 bits (210), Expect = 1e-015
 Identities = 37/71 (52%), Positives = 55/71 (77%)
 Frame = -1

Query:     78 GGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVRQLGLELGRPVRFLYEDQTGRPQPPSQP 137
              | ||.|||.|  .. . |.|. ||..|. ||..|||.|.||   |||||| |.| |   |
Sbjct: 759273 GVFPEDFSILMTIKPKAGIQSFLLSVYNEQGIQQLGVEVGRSPLFLYEDQHGKPAPEDYP 759094

Query:    138 VFRGLSLADGK 148
              .|| ..|||||
Sbjct: 759093 LFRAINLADGK 759061

>Zv7_masked||Zv7_scaffold2048 |chr21|Len:170709|start:6943760|end:7114468

          Length = 170709

 Score =  85 bits (209), Expect = 2e-015
 Identities = 36/55 (65%), Positives = 47/55 (85%)
 Frame = -1

Query:    148 KWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTHGVIIFGARILDEEVFE 202
              .|||||..|  ||.|||.||||.||| | ||  |..|| |...|| |||||||||
Sbjct: 121404 RWHRVAISVHKQSITLILDCKKKVTRTLSRSPHPIIDTKGIVVFGTRILDEEVFE 121240

>Zv7_masked||Zv7_scaffold1881 |chr19|Len:3940805|start:4464869|end:8405673

          Length = 3940805

 Score =  83 bits (204), Expect = 7e-015
 Identities = 37/68 (54%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
 Frame = -1

Query:    148 KWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTHGVIIFGARILDEEVFE----G 203
              .|||.|..|. ...|||.||| |.|. ||||  ||||| |. .||||.||||||.     
Sbjct: 431474 RWHRIAISVQKKNITLILDCKNRITKTLPRSNNPVLDTKGITVFGARLLDEEVFQVCFSN 431295

Query:    204 DVQELAIV 211
              .  || ||
Sbjct: 431294 ECNELEIV 431271

>Zv7_masked||Zv7_scaffold109 |chr2|Len:2140581|start:10426824|end:12567404

          Length = 2140581

 Score =  78 bits (190), Expect = 3e-013
 Identities = 32/59 (54%), Positives = 48/59 (81%)
 Frame = -3

Query:    144 LADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTHGVIIFGARILDEEVFE 202
              |   .|||||.... ..||.||||||....|| ||   ...| |. ||| |||||||||
Sbjct: 757102 LRTNRWHRVAISIEKKTVTMIVDCKKKISKPLSRSDHAIINTDGIAIFGTRILDEEVFE 756926

>Zv7_masked||Zv7_scaffold231 |chr3|Len:3782459|start:4839510|end:8621968

          Length = 3782459

 Score =  78 bits (190), Expect = 3e-013
 Identities = 37/69 (53%), Positives = 50/69 (72%)
 Frame = +2

Query:     80 FPKDFSLLTVVRTRPGLQAPLLTLYSAQGVRQLGLELGRPVRFLYEDQTGRPQPPSQPVF 139
              ||..|||.| |. .   |  ||.||  |||.|||||.||   |||||  |.| |   |.|
Sbjct: 488498 FPENFSLMTTVKAKRNSQFFLLSLYDEQGVQQLGLEMGRSPVFLYEDHKGQPAPDLYPLF 488677

Query:    140 RGLSLADGK 148
              | ..|.|||
Sbjct: 488678 RKINLSDGK 488704

>Zv7_masked||Zv7_scaffold231 |chr3|Len:3782459|start:4839510|end:8621968

          Length = 3782459

 Score =  78 bits (190), Expect = 3e-013
 Identities = 37/69 (53%), Positives = 50/69 (72%)
 Frame = +2

Query:     80 FPKDFSLLTVVRTRPGLQAPLLTLYSAQGVRQLGLELGRPVRFLYEDQTGRPQPPSQPVF 139
              ||..|||.| |. .   |  ||.||  |||.|||||.||   |||||  |.| |   |.|
Sbjct: 521090 FPENFSLMTTVKAKRNSQFFLLSLYDEQGVQQLGLEMGRSPVFLYEDHKGQPAPDLYPLF 521269

Query:    140 RGLSLADGK 148
              | ..|.|||
Sbjct: 521270 RKINLSDGK 521296

>Zv7_masked||Zv7_scaffold2333 |chr24|Len:852486|start:26652353|end:27504838

          Length = 852486

 Score =  73 bits (178), Expect = 7e-012
 Identities = 30/55 (54%), Positives = 44/55 (80%)
 Frame = +2

Query:    148 KWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTHGVIIFGARILDEEVFE 202
              .|||| ..|. ..||..|||||..|.|| ||    .|| |. .|| |||||| ||
Sbjct: 233228 RWHRVGISVEKKTVTIVVDCKKKLTKPLGRSDHASIDTKGITVFGTRILDEESFE 233392

>Zv7_masked||Zv7_scaffold231 |chr3|Len:3782459|start:4839510|end:8621968

          Length = 3782459

 Score =  72 bits (174), Expect = 2e-011
 Identities = 33/55 (60%), Positives = 42/55 (76%)
 Frame = +3

Query:    148 KWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTHGVIIFGARILDEEVFE 202
              .|||.| .|.|.|||| .||||  |  | |   ||. | |||.|| |.|||||||
Sbjct: 521607 RWHRIAYSVEGKSVTLYLDCKKVQTLELMRGDDPVVSTDGVIVFGTRLLDEEVFE 521771

>Zv7_masked||Zv7_NA70 |chrNA|Len:105701

          Length = 105701

 Score =  71 bits (173), Expect = 3e-011
 Identities = 32/55 (58%), Positives = 40/55 (72%)
 Frame = -1

Query:   148 KWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTHGVIIFGARILDEEVFE 202
             .||||| .|.|| ||| .||.|  |  |||   | . | || .|| |.|||||||
Sbjct: 89129 RWHRVAYSVEGQKVTLYLDCQKVATLDLPRGPEPKVSTAGVTVFGTRLLDEEVFE 88965

>Zv7_masked||Zv7_scaffold2333 |chr24|Len:852486|start:26652353|end:27504838

          Length = 852486

 Score =  63 bits (152), Expect = 8e-009
 Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 6/56 (10%)
 Frame = +1

Query:     29 APPVDVLRALRFPSLPDGVRRAKGIC------PADVAYRVARPAQLSAPTRQLFPG 78
              | |||||. | ||..|.|| .  | |        | ||.... |||||||.|||||
Sbjct: 224635 AEPVDVLKVLEFPTVPEGVEKTSGFCTNRRASQPDAAYKISKNAQLSAPTKQLFPG 224802

>Zv7_masked||Zv7_scaffold1881 |chr19|Len:3940805|start:4464869|end:8405673

          Length = 3940805

 Score =  62 bits (149), Expect = 2e-008
 Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 6/56 (10%)
 Frame = -2

Query:     31 PVDVLRALRFPSLPDGVRRAKGICPA------DVAYRVARPAQLSAPTRQLFPGGF 80
              |||||| |. ||||.||..  | | .      | |||. . ||.||||.||| | |
Sbjct: 434470 PVDVLRVLQLPSLPEGVQKVPGFCTSRLSGTPDHAYRITKKAQISAPTKQLFSGRF 434303

>Zv7_masked||Zv7_scaffold109 |chr2|Len:2140581|start:10426824|end:12567404

          Length = 2140581

 Score =  61 bits (146), Expect = 4e-008
 Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 6/56 (10%)
 Frame = -3

Query:     29 APPVDVLRALRFPSLPDGVRRAKGIC------PADVAYRVARPAQLSAPTRQLFPG 78
              | |||||. | | | |.||..  | |        |||||| . ||.||||.|||||
Sbjct: 763330 AEPVDVLKVLDFKSSPEGVKKTPGFCTIRRGSKPDVAYRVDKRAQISAPTKQLFPG 763163

>Zv7_masked||Zv7_scaffold2048 |chr21|Len:170709|start:6943760|end:7114468

          Length = 170709

 Score =  59 bits (141), Expect = 1e-007
 Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 7/59 (11%)
 Frame = -2

Query:     26 WAGAPPVDVLRALRFPSLPDGVRRAKGICP-------ADVAYRVARPAQLSAPTRQLFP 77
              .. | | |.|. | | |||||| .  | |         |||||| . |||||||.||.|
Sbjct: 138155 FSAAEPADLLKILDFHSLPDGVTKTTGFCTHRKSSKGPDVAYRVTKDAQLSAPTKQLYP 137979

>Zv7_masked||Zv7_scaffold231 |chr3|Len:3782459|start:4839510|end:8621968

          Length = 3782459

 Score =  47 bits (109), Expect = 7e-004
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
 Frame = +2

Query:     32 VDVLRALRFPSLPDGVRRAKGIC-------PADVAYRVARPAQLSAPTRQLFPGGFPKD 83
              .||||||      .||    |.|         |.|||. .  ||||||.|||||   .|
Sbjct: 488255 MDVLRALELSEDMEGVTVEAGLCTERKGTSETDMAYRIDKKIQLSAPTKQLFPGMDARD 488431

>Zv7_masked||Zv7_scaffold231 |chr3|Len:3782459|start:4839510|end:8621968

          Length = 3782459

 Score =  47 bits (109), Expect = 7e-004
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
 Frame = +2

Query:     32 VDVLRALRFPSLPDGVRRAKGIC-------PADVAYRVARPAQLSAPTRQLFPGGFPKD 83
              .||||||      .||    |.|         |.|||. .  ||||||.|||||   .|
Sbjct: 520847 MDVLRALELSEDMEGVTVEAGLCTERKGTSETDMAYRIDKKIQLSAPTKQLFPGMDARD 521023

>Zv7_masked||Zv7_NA70 |chrNA|Len:105701

          Length = 105701

 Score =  45 bits (104), Expect = 0.003
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
 Frame = -2

Query:    29 APPVDVLRALRFPSLPDGVRRAKGIC-------PADVAYRVARPAQLSAPTRQLFPG 78
             | |.|||. |      .||    |.|        ||.||.. .  |.| || |||||
Sbjct: 92182 ANPIDVLKVLDLSESMEGVSLEAGLCSSRRGSEEADLAYKIDKKIQVSVPTSQLFPG 92012

 
    Posted date:  Tue Aug 07 17:35:53 2007
  Number of letters in database: 480,106,604
  Number of sequences in database:  7,494

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 807,279,395
Number of Sequences: 7494
Number of Extensions: 807279395
Number of Successful Extensions: 35475885
Number of sequences better than 0.0: 0
TBLASTN 7.6.0