BLASTP 7.6.0


Query=uc003rpa
       |6_cox_hap1|NM_033554|P20036|HA2Q_HUMAN|HLA-DPA1|NM_033554|NP_291032|maj
       or histocompatibility complex, class II, DP
        (260 letters)

Database: Zv7_masked;
          7,494 sequences; 480,106,604 total letters
                                                                  Score    E

Zv7_masked||Zv7_scaffold2536 |chrUn|Len:854719                          92   1e-017
Zv7_masked||Zv7_scaffold816 |chr8|Len:749938|start:40469784|end:...     89   1e-016
Zv7_masked||Zv7_scaffold815 |chr8|Len:692935|start:39776749|end:...     84   3e-015
Zv7_masked||Zv7_scaffold816 |chr8|Len:749938|start:40469784|end:...     84   3e-015
Zv7_masked||Zv7_scaffold804 |chr8|Len:1441686|start:34500888|end...     80   5e-014
Zv7_masked||Zv7_scaffold804 |chr8|Len:1441686|start:34500888|end...     62   1e-008
Zv7_masked||Zv7_scaffold349 |chr4|Len:4290316|start:10502327|end...     58   2e-007

>Zv7_masked||Zv7_scaffold2536 |chrUn|Len:854719

          Length = 854719

 Score =  92 bits (227), Expect = 1e-017
 Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
 Frame = -3

Query:    116 DPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYS 175
              .||| ...|.  | ||  | ||||.  |||| ..|.|  |   |||||  | . ||.| .
Sbjct: 756017 EPPETSIYPRNEVLLGVDNVLICHVTGFFPPPVDVSWSRNNVKVTEGVDVSQYRPRSDQT 755838

Query:    176 FHKFHYLTFVPSAEDFYDCRVEHWGL-DQPLLKHW 209
              || |  |   |.| | | | | |  | .||  | |
Sbjct: 755837 FHMFSSLKIRPAAGDIYGCTVNHAALQEQPQTKLW 755733

>Zv7_masked||Zv7_scaffold816 |chr8|Len:749938|start:40469784|end:41219721

          Length = 749938

 Score =  89 bits (218), Expect = 1e-016
 Identities = 40/95 (42%), Positives = 55/95 (57%)
 Frame = +2

Query:    115 NDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDY 174
              ..|| | ..|.  |.|   ||||||.  |||| . | |  |   ||.|   | . |  | 
Sbjct: 717926 SEPPWVLLYPRNDVKLNLKNTLICHVTGFFPPPVRVLWTKNNVNVTDGSTISRYYPDNDR 718105

Query:    175 SFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHW 209
              .|. |  |.|.|   | | | |||  | ||  . |
Sbjct: 718106 NFNVFSQLSFIPEEGDVYSCSVEHKALQQPQTRTW 718210

>Zv7_masked||Zv7_scaffold815 |chr8|Len:692935|start:39776749|end:40469683

          Length = 692935

 Score =  84 bits (207), Expect = 3e-015
 Identities = 38/94 (40%), Positives = 52/94 (55%)
 Frame = -1

Query:    116 DPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYS 175
              .||  ...||   .|   ||||||.  |||| . | |  |   ||.|   | . |  | .
Sbjct: 595033 EPPWSSIYPKSDPQLNLKNTLICHVTGFFPPPVRVLWTKNNVNVTDGSTISRYYPNKDGT 594854

Query:    176 FHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHW 209
               . |  |.|.|   | | | |||  | ||  . |
Sbjct: 594853 MNVFSRLSFIPEEGDIYSCSVEHKALQQPQTRTW 594752

>Zv7_masked||Zv7_scaffold816 |chr8|Len:749938|start:40469784|end:41219721

          Length = 749938

 Score =  84 bits (206), Expect = 3e-015
 Identities = 39/94 (41%), Positives = 52/94 (55%)
 Frame = +2

Query:    116 DPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYS 175
              .||  ||. .  |.|   ||||||.  |||| . | |  |   ||.|   | . |  | .
Sbjct: 726914 EPPWTTVYSRNDVKLNVKNTLICHVTGFFPPPVRVLWTKNNVNVTDGSTISRYYPNKDGT 727093

Query:    176 FHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHW 209
               . |  |.|.|   | | | |||  | ||  . |
Sbjct: 727094 MNVFSRLSFIPEEGDVYGCSVEHKALQQPQTRTW 727195

>Zv7_masked||Zv7_scaffold804 |chr8|Len:1441686|start:34500888|end:35942573

          Length = 1441686

 Score =  80 bits (196), Expect = 5e-014
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
 Frame = -1

Query:   116 DPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYS 175
             |||  ... |. | | . ||||||.  |||| .||.|  | ..| | .. | .   .| .
Sbjct: 34221 DPPVTSIYSKDEVVLDKKNTLICHVTGFFPPPVNVSWTKNNDIVLEEISFSQYRENSDGT 34042

Query:   176 FHKFHYLTFVPSAEDFYDCRVEHWGLD-QPLLKHW 209
             |. |  | | |.  | | | |.|  .  |   | |
Sbjct: 34041 FNMFSALKFTPAEGDIYSCTVKHRSIQGQTNTKTW 33937

>Zv7_masked||Zv7_scaffold804 |chr8|Len:1441686|start:34500888|end:35942573

          Length = 1441686

 Score =  62 bits (150), Expect = 1e-008
 Identities = 30/96 (31%), Positives = 49/96 (51%)
 Frame = -1

Query:   118 PEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFH 177
             ||||.      |   |  |.|   .|.|  . ..|| .|. ||  |  .. .   |. . 
Sbjct: 27885 PEVTIKSVRQAEGRHPAVLLCSAYEFYPKKIKMSWLRDGKEVTSDVTSTMEMADGDWYYQ 27706

Query:   178 KFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQE 213
                .| . | . .   | |||  | ||| | |  .|
Sbjct: 27705 IHSHLEYTPKSGEKIQCLVEHASLTQPLTKDWSKRE 27598

>Zv7_masked||Zv7_scaffold349 |chr4|Len:4290316|start:10502327|end:14792642

          Length = 4290316

 Score =  58 bits (139), Expect = 2e-007
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = -2

Query:     118 PEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFH 177
               |.| |.   | | |.||||||..  | || ...  | ||.....     |   .  . ||
Sbjct: 2782758 PKVHVYSHFPGEYGKPNTLICYVSSFHPPDISIELLKNGQVMSDTKQTDLAFEK-GWQFH 2782582

Query:     178 KFHYLTFVPSAEDFYDCRVEH 198
                   . | |   | | | | |
Sbjct: 2782581 LTKSVAFTPEKGDEYTCSVRH 2782519

 
    Posted date:  Tue Aug 07 17:35:53 2007
  Number of letters in database: 480,106,604
  Number of sequences in database:  7,494

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 807,279,395
Number of Sequences: 7494
Number of Extensions: 807279395
Number of Successful Extensions: 35475885
Number of sequences better than 0.0: 0
TBLASTN 7.6.0