BLASTP 7.6.0


Query=fugu4_747176 |jgi|Takru4|747176|fgh5_pg.C_scaffold_5016000001
        (275 letters)

Database: hg18;
          45,480 sequences; 22,939,511 total letters
                                                                  Score    E

hg18||uc003rnt |6_cox_hap1|NM_022555|P79483|2B31_HUMAN|HLA-DRB3|...     30   2.885
hg18||uc003rnu |6_cox_hap1|CR603301|O19507|O19507_HUMAN|HLA-DRB3...     30   2.885

>hg18||uc003rnt
        |6_cox_hap1|NM_022555|P79483|2B31_HUMAN|HLA-DRB3|NM_022555|NP_072049|ma
        jor histocompatibility complex, class II, DR

          Length = 266

 Score =  30 bits (66), Expect = 2.885
 Identities = 11/38 (28%), Positives = 24/38 (63%)

Query: 208 DNWAVNGEGFIQFDAGAQKWKALSPSAEMIKDSWNSRE 245
           | .  | | |..||.   ...|..     . .||||..
Sbjct:  57 DRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQK 94

>hg18||uc003rnu |6_cox_hap1|CR603301|O19507|O19507_HUMAN|HLA-DRB3|NA|NA|MHC
        class II HLA-DRB3 (Fragment)

          Length = 256

 Score =  30 bits (66), Expect = 2.885
 Identities = 11/38 (28%), Positives = 24/38 (63%)

Query: 208 DNWAVNGEGFIQFDAGAQKWKALSPSAEMIKDSWNSRE 245
           | .  | | |..||.   ...|..     . .||||..
Sbjct:  47 DRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQK 84

 
    Posted date:  Mon Jul 30 19:38:39 2007
  Number of letters in database: 22,939,511
  Number of sequences in database:  45,480

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,842,887
Number of Sequences: 45480
Number of Extensions: 193842887
Number of Successful Extensions: 11488998
Number of sequences better than 0.0: 0
BLASTP 7.6.0