BLASTP 7.6.0


Query=fugu4_744608 |jgi|Takru4|744608|fgh5_pg.C_scaffold_2136000001
        (288 letters)

Database: hg18;
          45,480 sequences; 22,939,511 total letters
                                                                  Score    E

hg18||uc002bwt |15|NM_014918|Q86X52|CHSS1_HUMAN|CHSY1|NM_014918|...    415   3e-116
hg18||uc003kvd |5|NM_175856|Q70JA7|CHSS3_HUMAN|CHSY-2|NM_175856|...    324   8e-089
hg18||uc003sqz |7|AJ132443|Q96QH4|Q96QH4_HUMAN|C1GALT1|NM_020156...     60   2e-009
hg18||uc003sra |7|NM_020156|Q9NS00|Q9NS00_HUMAN|C1GALT1|NM_02015...     60   2e-009
hg18||uc003kvd |5|NM_175856|Q70JA7|CHSS3_HUMAN|CHSY-2|NM_175856|...     47   3e-005
hg18||uc002vrs |2|NM_145236|Q8NFL0|B3GT7_HUMAN|B3GNT7|NM_145236|...     29   6.856

>hg18||uc002bwt
        |15|NM_014918|Q86X52|CHSS1_HUMAN|CHSY1|NM_014918|NP_055733|carbohydrate
        (chondroitin) synthase 1

          Length = 802

 Score =  415 bits (1066), Expect = 3e-116
 Identities = 204/274 (74%), Positives = 229/274 (83%), Gaps = 7/274 (2%)

Query:   1 MAGRSRRAWFSVLLGLVVGFTLASRLILPKATELKKAGQKRKANPAGCGLNSGLLKEHRR 60
           || | |||| |||||||.|| |||||.||.|.|||.|| .|.|.| ||   ||     . 
Sbjct:   1 MAARGRRAWLSVLLGLVLGFVLASRLVLPRASELKRAGPRRRASPEGC--RSGQAAASQA 58

Query:  61 GHWPAQDNGS---PATEHP--GSRSNEFLFVGVMTAQKYLNNRAVAAHRTWAQTIPGHVE 115
           |       |.   |    |  | |   |||||||||||||  |||||.|||..|||| |.
Sbjct:  59 GGARGDARGAQLWPPGSDPDGGPRDRNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVQ 118

Query: 116 FFSSEGSDTSIPIPIVALRNVDDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKG 175
           ||||||||||.|||.| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 FFSSEGSDTSVPIPVVPLRGVDDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKG 178

Query: 176 EKLEGFLRSLNSSEAIFLGQTGMGARDELGKLALEPGENFCMGGPGVIMSREVLKRMVPH 235
           ..|| ||||||||| .||||||.|  .|.|||||||||||||||||||||||||.|||||
Sbjct: 179 DRLENFLRSLNSSEPLFLGQTGLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVPH 238

Query: 236 IRECLQEMYTTHEDVEVGRCVRRFAGVQCVWSYE 269
           | .||.||||||||||||||||||||||||||||
Sbjct: 239 IGKCLREMYTTHEDVEVGRCVRRFAGVQCVWSYE 272

>hg18||uc003kvd
        |5|NM_175856|Q70JA7|CHSS3_HUMAN|CHSY-2|NM_175856|NP_787052|chondroitin
        sulfate synthase 3

          Length = 882

 Score =  324 bits (830), Expect = 8e-089
 Identities = 161/245 (65%), Positives = 185/245 (75%), Gaps = 20/245 (8%)

Query:  29 PKATELKKAGQKRKANPAGCGLNSGLLKEHRRGHWPAQDNGSPATEHPGSRSNEFLFVGV 88
           |.  .   |||.|   |      ||             | |. |   | .|  .||.|||
Sbjct: 134 PEEEDGGAAGQRRDGRPGSSHNGSG-------------DGGAAA---PSARPRDFLYVGV 177

Query:  89 MTAQKYLNNRAVAAHRTWAQTIPGHVEFFSSE----GSDTSIPIPIVALRNVDDSYPPQK 144
           ||||||| .||.|| ||||. ||| ||||||.          |.|..||  |||||||||
Sbjct: 178 MTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDSYPPQK 237

Query: 145 KSFMMLKYMHDHYLDKYEWFMRADDDVYIKGEKLEGFLRSLNSSEAIFLGQTGMGARDEL 204
           |||||.|||||||||||||||||||||||||.||| ||||||||. ..|||||.|  .||
Sbjct: 238 KSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNIEEL 297

Query: 205 GKLALEPGENFCMGGPGVIMSREVLKRMVPHIRECLQEMYTTHEDVEVGRCVRRFAGVQC 264
           ||| |||||||||||||.| |||||.|||||| |||.|||||||||||||||||| | ||
Sbjct: 298 GKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQC 357

Query: 265 VWSYE 269
           |||||
Sbjct: 358 VWSYE 362

>hg18||uc003sqz |7|AJ132443|Q96QH4|Q96QH4_HUMAN|C1GALT1|NM_020156|NP_064541|core
        1 synthase,

          Length = 309

 Score =  60 bits (145), Expect = 2e-009
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query:  88 VMTAQKYLNNRAVAAHRTWAQTIPGHVEFFSSEGSDTSIPIPIVALRNVDDSYPPQKKSF 147
           |||  . |  .|     ||||     | | ||| .      | | |.  .       |. 
Sbjct:  93 VMTGPQNLEKKAKHVKATWAQRC-NKVLFMSSEENK---DFPAVGLKTKEGRDQLYWKTI 148

Query: 148 MMLKYMHDHYLDKYEWFMRADDDVYIKGEKLEGFLRSLNSSEAIFLGQ 195
              .|.|.|||.  .||..|||| |.  . |   |   .  | |. |.
Sbjct: 149 KAFQYVHEHYLEDADWFLKADDDTYVILDNLRWLLSKYDPEEPIYFGR 196

>hg18||uc003sra
        |7|NM_020156|Q9NS00|Q9NS00_HUMAN|C1GALT1|NM_020156|NP_064541|core 1
        synthase,

          Length = 363

 Score =  60 bits (145), Expect = 2e-009
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query:  88 VMTAQKYLNNRAVAAHRTWAQTIPGHVEFFSSEGSDTSIPIPIVALRNVDDSYPPQKKSF 147
           |||  . |  .|     ||||     | | ||| .      | | |.  .       |. 
Sbjct:  93 VMTGPQNLEKKAKHVKATWAQRC-NKVLFMSSEENK---DFPAVGLKTKEGRDQLYWKTI 148

Query: 148 MMLKYMHDHYLDKYEWFMRADDDVYIKGEKLEGFLRSLNSSEAIFLGQ 195
              .|.|.|||.  .||..|||| |.  . |   |   .  | |. |.
Sbjct: 149 KAFQYVHEHYLEDADWFLKADDDTYVILDNLRWLLSKYDPEEPIYFGR 196

>hg18||uc003kvd
        |5|NM_175856|Q70JA7|CHSS3_HUMAN|CHSY-2|NM_175856|NP_787052|chondroitin
        sulfate synthase 3

          Length = 882

 Score =  47 bits (109), Expect = 3e-005
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query:  1 MAGRSRRAWFSVLLGLVVGFTLASRLILPKATELKKAGQKRKAN 44
          || |||| | || ||||.||| || || |.  || .  .||. .
Sbjct:  1 MAVRSRRPWMSVALGLVLGFTAASWLIAPRVAELSE--RKRRGS 42

>hg18||uc002vrs
        |2|NM_145236|Q8NFL0|B3GT7_HUMAN|B3GNT7|NM_145236|NP_660279|UDP-GlcNAc:b
        etaGal

          Length = 401

 Score =  29 bits (63), Expect = 6.856
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 145 KSFMMLKYMHDHYLDKYEWFMRADDDVYIKGEKLEGFLRSLNSSEAIFLGQTGMGAR 201
           |    ||.. | |     .  . ||||..    |  ||      | .|.|     ||
Sbjct: 218 KEIHFLKWL-DIYCPHVPFIFKGDDDVFVNPTNLLEFLADRQPQENLFVGDVLQHAR 273

 
    Posted date:  Mon Jul 30 19:38:39 2007
  Number of letters in database: 22,939,511
  Number of sequences in database:  45,480

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,842,887
Number of Sequences: 45480
Number of Extensions: 193842887
Number of Successful Extensions: 11488998
Number of sequences better than 0.0: 0
BLASTP 7.6.0